Summarize GRaNIE objects

This function summarizes a list of GRaNIE objects, extracting various statistics and parameters from each GRN, and returns a summary data frame.

summarize_GRNs(GRN.list, forceRerun = FALSE)

Arguments

GRN.list

A list of GRaNIE objects. This list can either be manually defined by constructing a list that contains an arbitrary number of GRaNIE objects or the helper functions generateGRNList_custom or generateGRNList_Seurat can be used to automatically populate that list given a specific root directory in which GRaNIE objects are located.

forceRerun

A logical value indicating whether to force rerun the function and re-generate the output even if the output files already exist on disk or in the object. Default is FALSE.

Value

A data frame containing the summarized statistics and parameters for each GRN.

Examples

if (FALSE) {
GRN.list <- list(GRN1, GRN2, GRN3)
summary_df <- summarize_GRNs(GRN.list)
}