plot a relation between real log FC and predicted log FC in a scatter plot — plot_GRaNPA_TF_imp • GRaNPA

plot a relation between real log FC and predicted log FC in a scatter plot

plot_GRaNPA_TF_imp(
  GRaNPA.object,
  outputFolder,
  plot_name,
  width = 5,
  height = 5,
  num = 5,
  color = c("Blues", "Reds", "Greens", "Greys", "Purples", "Oranges")
)

Arguments

GRaNPA.object: GRaNPA object, An output from GRaNPA main function.
outputFolder: Absolute file path. No default.
plot_name: Exact name of the plot
width: width of the plot which be used by ggsave
height: height of the plot which be used by ggsave
num: Number of important TFs to show in the plot
color: you can choose one of the colors from the list ("Reds","Greens","Greys","Blues","Purples","Oranges"). Default is Blues.

Value

The final scatter plot

Examples

plot_GRaNPA_TF_imp(GRaNPA.object, "your/path/" , "density_plot" , width = 8, height = 6)
#> Error in apply(GRaNPA.object$nrm_imp_scaled, 1, mean): object 'GRaNPA.object' not found